Source BioScience  

Microarray Analysis Quality Assurance


Geneservice operate under an on-going Quality Assurance Program that ensures precision, accuracy and reliability of all of the services offered to customers. The best practices have been documented and are, where appropriate, consistent with:

  • all Good Laboratory Practices (GLP's);
  • all applicable safety, environmental and legal regulations and guidelines;
  • the best practices of other industry leaders.

The QA Program covers all areas from sample log-in, through sample analysis to final data reporting. Major components and features of the QA Program include:

Data Handling

The Project Scientists performing the Affymetrix GeneChip® Expression Analysis enter all data in a secure and dedicated database which maintains confidentiality and anonymity during testing. The database is used to:

  • log incoming samples;
  • assign accession numbers to samples;
  • determine testing or procedures;
  • track all results;
  • transcribe results to report format.

Standard Operating Procedures (SOP)

All procedures used at the Laboratory are documented in SOPs to help deliver the highest possible quality of service to our customers on every project.

Laboratory Setup

Affymetrix Expression Analysis Assay uses RNA as a starting material. Hence, it was essential to develop a program for maintaining an RNase-free Lab that involves:

  • routine decontamination of lab bench tops, pipettes and tube racks with RNaseZap®;
  • use of certified RNase-free pipette tips; microcentrifuge tubes, buffers and reagents;
  • using Qbiogene' template Tamer™ PCR Workstation for setting up reactions.

Equipment Maintenance

Instruments are regularly cleaned as recommended by the manufacture and calibrated where appropriate by contract-service. Documentation of all calibration and standardization activities is maintained throughout the laboratory.

Quality Control (QC) Measures

Throughout the Expression Analysis of your samples, our experienced Project Scientists perform extensive QC checks to assure you that the data you receive is accurate and precise.

Summary of QC Measures for Expression Analysis Procedures


1st QC - Total RNA

UV spectrophotometry
RNA LabChip® Analysis (Agilent).

  • cDNA synthesis
  • Clean-up of cDNA
  • Synthesis of biotin-labeled cRNA
  • Purification of cRNA

2nd QC - cRNA
UV spectrophotometry
RNA LabChip® Analysis (Agilent).

  • Fragmentation of cRNA

3rd QC - fragmented cRNA
RNA LabChip® Analysis (Agilent).

  • Hybridisation to a Test3 array

    4th QC - Test array
    Expression Report File
  • Hybridisation to a genome array

5th QC - Genome Array
Expression Report File

 

© Source BioScience plc 2010
Contact webmaster
| Quality |    | Terms and Conditions |