COSMID DNA MINI-PREP PREPARATION
Any standard mini-prep method is suitable. Below is the method used
in-house at Geneservice Ltd.
- Streak out cosmid onto LB + kanamycin plate. Incubate overnight at
37º C.
- Dispense 5 ml LB medium into a 50ml sterile tube. Add 5 µl kanamycin
( 30 mg/ml). Inoculate with a single colony and incubate overnight in
shaking incubator 37º C /170 rpm.
- Transfer aliquot of 140 µl to a 1.5ml microtube. Add 40 µl
80 % glycerol.
- Centrifuge 15 min 3000 rpm.
- Pour off supernatant and discard. Re-suspend pellet in 200 µl
GTE.
- Lysis: Add 400 µl 0.2 M NaOH/1% SDS (freshly made). Mix by inversion.
Place on ice for 30 min.
- Add 300 µl 3M K Ac. Invert to mix. Place on ice for 30 min.
- Add 10 µl RNAase A stock (10mg/ml). Incubate 10 min 37ºC.
- Centrifuge 10 min at 13000 rpm in microfuge. Decant supernatant into
a 1.5ml microtube containing 1 ml cold ethanol, vortex briefly and leave
to stand for 1 min.
- Centrifuge 10 min at 13000 rpm in microfuge. Remove ethanol carefully
(preferably by suction technique).
- Add 200 µl cold 70% ethanol, vortex briefly, centrifuge 10 min
at 13000 rpm in microfuge, remove ethanol carefully (as above).
- Air dry pellet. Add 50 µl TE and leave to re-suspend overnight
at 4°C.
Solutions:
GTE (10 ml) :
0.5 ml 20% glucose
0.25 ml 1M Tris/HCl pH 7.5
0.2 ml 0.5M EDTA pH 8.0.
9.05 ml sterile distilled water
Lysis Buffer (100 ml 0.2M NaOH/1% SDS):
0.8 g NaOH
5 ml 20% SDS
95ml sterile distilled water.
19thJanuary 1999 Version 1.1
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